How can I used the UNIX to calculate total length of median?

  • patrick chia
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  • Newbie
  • patrick chia
  • Posts: 5

Post 3+ Months Ago

My input is:
>gi|624954|emb|X83528.1|CLPSCD Chlorobium limicola pscD gene
GAAAAGAGGA
>gi|30271926|ref|NC_004718.3| SARS coronavirus, complete genome
ATATTAGGTTTTTAC
>gi|73852470|ref|NC_007346.1| Emiliania huxleyi virus
TATATTTAACGCGAATGATT


My desired output:
Total length of median is: 15

What command line I should type to calculate total length of median? The length of nucleotide being compared are pscD gene, SARS coronavirus and Emiliania huxleyi virus. Thanks for all of your advise. Have a nice day

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